CSRDB- Cereal Small RNA Database | Tool name | CSRDB- Cereal Small RNA Database |
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| URL | http://sundarlab.ucdavis.edu/smrnas/ |
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| Important features | A bioinformatic resource for cereal crops, the Cereal Small RNA Database (CSRDB), consists of extensive data sets of maize and rice smRNA sequences obtained from high-throughput pyrosequencing.
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| Citations | Johnson C, Bowman L, Adai AT, Vance V, Sundaresan V. CSRDB: a small RNA
integrated database and browser resource for cereals. Nucleic Acids Res. 2007
Jan;35(Database issue):D829-33. Epub 2006 Dec 14. PubMed PMID: 17169981; PubMed
Central PMCID: PMC1781248.
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| Year of publication | 2007 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | SPECIES: plant, BROAD SCOPE RESOURCES: miscellanous, http://sundarlab.ucdavis.edu/smrnas/, A bioinformatic resource for cereal crops- the Cereal Small RNA Database (CSRDB)- consists of extensive data sets of maize and rice smRNA sequences obtained from high-throughput pyrosequencing.
, Johnson C- Bowman L- Adai AT- Vance V- Sundaresan V. CSRDB: a small RNA
integrated database and browser resource for cereals. Nucleic Acids Res. 2007
Jan;35(Database issue):D829-33. Epub 2006 Dec 14. PubMed PMID: 17169981; PubMed
Central PMCID: PMC1781248.
, 2007, 100, Online, I. SPECIES SUPPORTED INCLUDE: cereal crops II. QUERY OR INPUT DATA: 1. For target-site conservation and target sites in single transcript : Enter a small RNA sequence and enter query transcripts in FASTA format. 2. BLAST: enter sequence in FASTA or upload data or sequence location III. OUTPUT DATA: related to details on target site conservation. IV. ADDITIONAL INFORMATION: Plant microRNAs- siRNAs and trans-acting si-RNAs (ta-siRNAs) belong to the category of plant small RNAs.
, Predict secondary structure of a given precursor microRNA. |
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